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| Author | Identifier | Number of Items | Total Downloads |
|---|---|---|---|
| Ragan, M |  https://orcid.org/0000-0003-1672-7020 |
36 | 1587 |
| Title | Author(s) | IrusType | Repository | Item URL | Total Downloads |
|---|---|---|---|---|---|
| 143 Prokaryote genomes | Guillaume, Bernard; Chan, Cheong Xin; Ragan, Mark A. | Dataset | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:411283 | 9 |
| A two-phase strategy for detecting recombination in nucleotide sequences | Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. | Preprint | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:14212 | 20 |
| A Word-Oriented Approach to Alignment Validation | Beiko, Robert G.; Chan, Cheong Xin; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:7976 | 40 |
| Alignment-free network of 143 Prokaryote genomes | Bernard, Guillaume; Chan, Cheong Xin; Ragan, Mark A. | Dataset | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:411298 | 46 |
| Benchmarking the Detection and Analysis of Recombination | Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:7958 | 9 |
| Comparative transcriptomic analyses of Chromera and Symbiodiniaceae | Mohamed, Amin R.; Chan, Cheong Xin; Ragan, Mark A.; Zhang, Jia; Cooke, Ira; Ball, Eldon E.; Miller, David J. | Article | University of Queensland [UQ eSpace] | 5 | |
| Detecting Recombination in Evolving Nucleotide Sequences | Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:7888 | 30 |
| Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates | Kassahn, K. S.; Dang, V. T.; Wilkins, S. J.; Perkins, A. C.; Ragan, M. A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:195383 | 26 |
| Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts | Han, Siew Ping; Kassahn, Karin S.; Skarshewski, Adam; Ragan, Mark A.; Rothnagel, Joseph A.; Smith, Ross | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:215551 | 23 |
| Gene regulatory network inference: Evaluation and application to ovarian cancer allows the prioritization of drug targets | Madhamshettiwar, Piyush B.; Maetschke, Stefan R.; Davis, Melissa J.; Reverter, Antonio; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:278518 | 1 |
| Genome assemblies and the associated annotations for Polarella glacialis CCMP1383 and CCMP2088 | Stephens, Timothy; Ragan, Mark A.; Bhattacharya, Debashish; Chan, Cheong Xin | Dataset | University of Queensland [UQ eSpace] | 185 | |
| Genome assemblies and the associated annotations for seven Symbiodinium isolates | González-Pech, Raúl A.; Ragan, Mark A.; Bhattacharya, Debashish; Chan, Cheong Xin | Dataset | University of Queensland [UQ eSpace] | 184 | |
| Genomics and evolution of microbial eukaryotes | Ragan, Mark | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:190090 | 97 |
| Ichthyophonus irregularis sp. nov. from the yellowtail flounder Limanda ferruginea from the Nova Scotia shelf | Rand, Thomas G.; White, Kelly; Cannone, Jamie J.; Gutell, Robin R.; Murphy, Colleen A.; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:321278 | 27 |
| Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores | Clarke, G. D. P.; Beiko, R. G.; Ragan, M. A.; Charlebois, R. L. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:62777 | 35 |
| Integrating hierarchical controlled vocabularies with OWL ontology: A case study from the domain of molecular interactions | Davis, M.; Newman, A.; Khan, I.; Hunter, J.; Ragan, M. A. | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:151364 | 83 |
| Large-scale detection of recombination in nucleotide sequences | Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:196507 | 32 |
| Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements | Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:245429 | 34 |
| mCOPA: analysis of heterogeneous features in cancer expression data | Wang, Chenwei; Taciroglu, Alperen; Maetschke, Stefan R.; Nelson, Colleen C.; Ragan, Mark A.; Davis, Melissa J. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:289255 | 2 |
| Molecular epidemiology of clinical Cryptococcus neoformans strains from India | Jain, N.; Wickes, B. L.; Keller, S. A.; Fu, J.; Casadevall, A.; Jain, P.; Ragan, M. A.; Banerjee, U.; Fries, B. C. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:77673 | 27 |
| Oh Father Where Art Thou? Comparing Different Ways of Finding Recombination Events | Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:7957 | 4 |
| Pattern-based phylogenetic distance estimation and tree reconstruction | Hoehl, Michael; Rigoutsos, Isidore; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:83275 | 31 |
| Personalised pathway analysis reveals association between DNA repair pathway dysregulation and chromosomal instability in sporadic breast cancer | Liu, Chao; Srihari, Sriganesh; Lal, Samir; Gautier, Benoit; Simpson, Peter T.; Khanna, Kum Kum; Ragan, Mark A.; LeCao, Kim-Anh | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:372109 | 48 |
| Phylogenetic and Molecular Characterization of a 23S Ribosomal-Rna Gene Positions the Genus Campylobacter in the Epsilon-Subdivision of the Proteobacteria and Shows That the Presence of Transcribed Spacers Is Common in Campylobacter Spp | Trust, T. J; Logan, S. M.; Gustafson, C. E.; Romaniuk, P. J.; Kim, N. W.; Chan, V. L.; Ragan, M. A.; Guerry, P.; Gutell, R. R. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:321276 | 42 |
| Phylogenetic position and ultrastructure of two Dermocystidium species (Ichthyosporea) from the common perch (Perca fluviatilis) | Pekkarinen, Marketta; Lom, Jiri; Murphy, Colleen A.; Ragan, Mark A.; Dykova, Iva | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:73853 | 72 |
| Physodes and the phenolic compounds of brown algae. Composition and significance of physodes in vivo | Ragan, M. A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:321867 | 214 |
| PhySortR: a fast, flexible tool for sorting phylogenetic trees in R | Stephens, Timothy; Bhattacharya, Debashish; Ragan, Mark A.; Chan, Cheong Xin | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:396118 | 44 |
| Position Paper for Semantic Web Life Sciences Workshop | Hunter, Jane; Ragan, Mark A.; Little, Suzanne | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:7836 | 7 |
| Protistan parasite QPX of hard-shell clam Mercenaria mercenaria is a member of Labyrinthulomycota | Ragan, Mark A.; MacCallum, Greg S.; Murphy, Colleen A.; Cannone, Jamie J.; Gutell, Robin R.; McGladdery, Sharon E. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:321251 | 49 |
| Quadratic kernelization for convex recoloring of trees | Bodlaender, Hans L.; Fellows, Michael R.; Langston, Michael A.; Ragan, Mark A.; Rosamond, Frances A.; Weyer, Mark | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:167180 | 1 |
| Recapitulating phylogenies using k-mers: from trees to networks [version 2; referees: 2 approved] | Bernard, Guillaume; Ragan, Mark A.; Chan, Cheong Xin | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:449103 | 29 |
| The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change | ReFuGe 2020 Consortium; Voolstra, Christian R; Miller, David J.; Ragan, Mark A.; Hoffmann, Ary A.; Hoegh-Guldberg, Ove; Bourne, David G.; Ball, Eldon E.; Ying, Hua; Forêt, Sylvain; Takahashi, Shunichi; Weynberg, Karen D.; van Oppen, Madeleine J. H.; | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:373455 | 38 |
| Towards a large integrated model of signal transduction and gene regulation events in mammalian cells | Fearnley, Liam G.; Ragan, Mark A.; Nielsen, Lars K. | Conference Papers/Posters | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:330269 | 2 |
| Understanding cellular function and disease with comparative pathway analysis | Davis, Melissa J.; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:306981 | 28 |
| Workflows in bioinformatics: Meta-analysis and prototype implementation of a workflow generator | Garcia, Alexander Garcia; Thoraval, Samuel; Garcia, Leyla J.; Ragan, Mark A. | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:9275 | 54 |
| Yeast as a biofertilizer alters plant growth and morphology | Lonhienne, Thierry; Mason, Michael G.; Ragan, Mark A.; Hugenholtz, Philip; Schmidt, Susanne; Paungfoo-Lonhienne, Chanyarat | Article | University of Queensland [UQ eSpace] | https://espace.library.uq.edu.au/view/UQ:325522 | 9 |
