Title |
Author(s) |
IrusType |
Repository |
Item URL |
Total Downloads |
143 Prokaryote genomes |
Guillaume, Bernard; Chan, Cheong Xin; Ragan, Mark A. |
Dataset |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:411283 |
9 |
A two-phase strategy for detecting recombination in nucleotide sequences |
Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. |
Preprint |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:14212 |
20 |
A Word-Oriented Approach to Alignment Validation |
Beiko, Robert G.; Chan, Cheong Xin; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:7976 |
40 |
Alignment-free network of 143 Prokaryote genomes |
Bernard, Guillaume; Chan, Cheong Xin; Ragan, Mark A. |
Dataset |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:411298 |
46 |
Benchmarking the Detection and Analysis of Recombination |
Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:7958 |
9 |
Comparative transcriptomic analyses of Chromera and Symbiodiniaceae |
Mohamed, Amin R.; Chan, Cheong Xin; Ragan, Mark A.; Zhang, Jia; Cooke, Ira; Ball, Eldon E.; Miller, David J. |
Article |
University of Queensland [UQ eSpace] |
|
5 |
Detecting Recombination in Evolving Nucleotide Sequences |
Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:7888 |
30 |
Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates |
Kassahn, K. S.; Dang, V. T.; Wilkins, S. J.; Perkins, A. C.; Ragan, M. A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:195383 |
26 |
Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts |
Han, Siew Ping; Kassahn, Karin S.; Skarshewski, Adam; Ragan, Mark A.; Rothnagel, Joseph A.; Smith, Ross |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:215551 |
23 |
Gene regulatory network inference: Evaluation and application to ovarian cancer allows the prioritization of drug targets |
Madhamshettiwar, Piyush B.; Maetschke, Stefan R.; Davis, Melissa J.; Reverter, Antonio; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:278518 |
1 |
Genome assemblies and the associated annotations for Polarella glacialis CCMP1383 and CCMP2088 |
Stephens, Timothy; Ragan, Mark A.; Bhattacharya, Debashish; Chan, Cheong Xin |
Dataset |
University of Queensland [UQ eSpace] |
|
185 |
Genome assemblies and the associated annotations for seven Symbiodinium isolates |
González-Pech, Raúl A.; Ragan, Mark A.; Bhattacharya, Debashish; Chan, Cheong Xin |
Dataset |
University of Queensland [UQ eSpace] |
|
184 |
Genomics and evolution of microbial eukaryotes |
Ragan, Mark |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:190090 |
97 |
Ichthyophonus irregularis sp. nov. from the yellowtail flounder Limanda ferruginea from the Nova Scotia shelf |
Rand, Thomas G.; White, Kelly; Cannone, Jamie J.; Gutell, Robin R.; Murphy, Colleen A.; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:321278 |
27 |
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores |
Clarke, G. D. P.; Beiko, R. G.; Ragan, M. A.; Charlebois, R. L. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:62777 |
35 |
Integrating hierarchical controlled vocabularies with OWL ontology: A case study from the domain of molecular interactions |
Davis, M.; Newman, A.; Khan, I.; Hunter, J.; Ragan, M. A. |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:151364 |
83 |
Large-scale detection of recombination in nucleotide sequences |
Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:196507 |
32 |
Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements |
Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:245429 |
34 |
mCOPA: analysis of heterogeneous features in cancer expression data |
Wang, Chenwei; Taciroglu, Alperen; Maetschke, Stefan R.; Nelson, Colleen C.; Ragan, Mark A.; Davis, Melissa J. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:289255 |
2 |
Molecular epidemiology of clinical Cryptococcus neoformans strains from India |
Jain, N.; Wickes, B. L.; Keller, S. A.; Fu, J.; Casadevall, A.; Jain, P.; Ragan, M. A.; Banerjee, U.; Fries, B. C. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:77673 |
27 |
Oh Father Where Art Thou? Comparing Different Ways of Finding Recombination Events |
Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:7957 |
4 |
Pattern-based phylogenetic distance estimation and tree reconstruction |
Hoehl, Michael; Rigoutsos, Isidore; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:83275 |
31 |
Personalised pathway analysis reveals association between DNA repair pathway dysregulation and chromosomal instability in sporadic breast cancer |
Liu, Chao; Srihari, Sriganesh; Lal, Samir; Gautier, Benoit; Simpson, Peter T.; Khanna, Kum Kum; Ragan, Mark A.; LeCao, Kim-Anh |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:372109 |
48 |
Phylogenetic and Molecular Characterization of a 23S Ribosomal-Rna Gene Positions the Genus Campylobacter in the Epsilon-Subdivision of the Proteobacteria and Shows That the Presence of Transcribed Spacers Is Common in Campylobacter Spp |
Trust, T. J; Logan, S. M.; Gustafson, C. E.; Romaniuk, P. J.; Kim, N. W.; Chan, V. L.; Ragan, M. A.; Guerry, P.; Gutell, R. R. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:321276 |
42 |
Phylogenetic position and ultrastructure of two Dermocystidium species (Ichthyosporea) from the common perch (Perca fluviatilis) |
Pekkarinen, Marketta; Lom, Jiri; Murphy, Colleen A.; Ragan, Mark A.; Dykova, Iva |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:73853 |
72 |
Physodes and the phenolic compounds of brown algae. Composition and significance of physodes in vivo |
Ragan, M. A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:321867 |
214 |
PhySortR: a fast, flexible tool for sorting phylogenetic trees in R |
Stephens, Timothy; Bhattacharya, Debashish; Ragan, Mark A.; Chan, Cheong Xin |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:396118 |
44 |
Position Paper for Semantic Web Life Sciences Workshop |
Hunter, Jane; Ragan, Mark A.; Little, Suzanne |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:7836 |
7 |
Protistan parasite QPX of hard-shell clam Mercenaria mercenaria is a member of Labyrinthulomycota |
Ragan, Mark A.; MacCallum, Greg S.; Murphy, Colleen A.; Cannone, Jamie J.; Gutell, Robin R.; McGladdery, Sharon E. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:321251 |
49 |
Quadratic kernelization for convex recoloring of trees |
Bodlaender, Hans L.; Fellows, Michael R.; Langston, Michael A.; Ragan, Mark A.; Rosamond, Frances A.; Weyer, Mark |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:167180 |
1 |
Recapitulating phylogenies using k-mers: from trees to networks [version 2; referees: 2 approved] |
Bernard, Guillaume; Ragan, Mark A.; Chan, Cheong Xin |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:449103 |
29 |
The ReFuGe 2020 Consortium—using “omics” approaches to explore the adaptability and resilience of coral holobionts to environmental change |
ReFuGe 2020 Consortium; Voolstra, Christian R; Miller, David J.; Ragan, Mark A.; Hoffmann, Ary A.; Hoegh-Guldberg, Ove; Bourne, David G.; Ball, Eldon E.; Ying, Hua; Forêt, Sylvain; Takahashi, Shunichi; Weynberg, Karen D.; van Oppen, Madeleine J. H.; |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:373455 |
38 |
Towards a large integrated model of signal transduction and gene regulation events in mammalian cells |
Fearnley, Liam G.; Ragan, Mark A.; Nielsen, Lars K. |
Conference Papers/Posters |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:330269 |
2 |
Understanding cellular function and disease with comparative pathway analysis |
Davis, Melissa J.; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:306981 |
28 |
Workflows in bioinformatics: Meta-analysis and prototype implementation of a workflow generator |
Garcia, Alexander Garcia; Thoraval, Samuel; Garcia, Leyla J.; Ragan, Mark A. |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:9275 |
54 |
Yeast as a biofertilizer alters plant growth and morphology |
Lonhienne, Thierry; Mason, Michael G.; Ragan, Mark A.; Hugenholtz, Philip; Schmidt, Susanne; Paungfoo-Lonhienne, Chanyarat |
Article |
University of Queensland [UQ eSpace] |
https://espace.library.uq.edu.au/view/UQ:325522 |
9 |